EcoLincNZ

Category: Dairy

  • Microbes matter in breaking down nitrogen in dairy pastures

    Our eyes are captivated by the breathtaking diversity of the living world, where billions of plants and animals enchant us with their variety and richness, thriving above ground or in water. But we often overlook the organisms beneath our feet, in the hidden world of soil, where an equally mesmerizing realm teems with life.

    E. R. Ingham: “Just one spoonful of soil can be home to millions of microbes“- the astonishing dynamic of these tiny, unseen organisms would blow our minds, if we only knew their story.

    I am fascinated by the biodiversity of the massive underground community. Countless small living things, such as microbes, insects, and earthworms, are tirelessly at work, busily breaking down organic matter and waste like leaf litter, faeces, and other dead organisms.

    Soil sample under the microscope, Image credit: © William Edge
    from Dreamstime.com CC BY-NC 2.0

    These organisms play fundamental roles in decomposition and also contribute to unlocking essential nutrients, like nitrogen and phosphorus, making these nutrients more available to plants. However, some microbial species can degrade useful substances, primarily affecting the cropping system and leading to lower crop yields in agriculture.

    In New Zealand, our grazing pastures face a significant challenge of soil microbes depleting essential nitrogen (N) in the soil. The NZ dairy industry has a substantial economic impact. A report by Sense Partners highlights that DairyNZ accounted for a quarter of New Zealand’s total export earnings (26 million) in 2023, making it a crucial contributor to national prosperity. For dairy farmers, “grass is green gold” because high-quality pasture is the key to their success, supporting healthy and productive livestock.

    Nitrogen boosts pasture supply, especially when N fertilizer is applied in mid to late spring. In most regions, this application results in an optimal and reliable grass response of around 10 to 15 kg DM/kg N. Why the need to apply synthetic fertiliser when nitrogen is abundant in the atmosphere, which contains 78% nitrogen. The catch is that atmospheric nitrogen is not directly available to most plants (except for legumes) due to its highly stable form (N2).

    Given the necessity of nitrogen fertilisers in grazing pasture systems, a go-to choice is urea. It’s most cost-effective and the most widely applied nitrogen fertiliser in NZ dairy pastures. The scale of its usage is staggering, with over 400,000 tonnes of urea being used annually in dairy farm systems since 2013.

    Two Cows by Martin Gommel | Flickr | CC BY-NC 2.0

    There is a downside. Ammonia-oxidizing soil microbes release an enzyme called urease that can break down over 80-90% of urea fertiliser when soil moisture is high. This leads to significant economic losses for farmers and contributes to environmental pollution through nitrate leaching.

    Note: Urea is the substance of solid nitrogen fertilizer, while urease is an enzyme found in plant tissues, fungi, bacteria, and some invertebrates, but not in animals.

    Dr. Hossein Alizadeh, a senior researcher in the Department of Agricultural Sciences at Lincoln University, leads a team focused on addressing the problem of nitrogen loss in soil. They have identified key culprits of rapid nitrogen loss in the soil – urease-producing microbes.

    By understanding these microbes better, the team can develop solutions to enhance the uptake of nitrogen nutrients by pastures and reduce greenhouse gas emissions. This is crucial because nitrogen from livestock urine and agricultural fertilisers converts to nitrous oxide (N2O), contributing to about one-sixth of New Zealand’s CO2 equivalent greenhouse gas emissions.

    To detect the nationwide urea degradation levels in dairy farm pastures, Dr. Alizadeh and his research team collected soil samples from various regions, including Auckland, Canterbury, Manawatu, Marlborough, Nelson, Otago, Taranaki, Waikato, Wairarapa, and the West Coast. The sampled pastures primarily consisted of ryegrass (Lolium perenne L.) and white clover (Trifolium repens L.). Some grazing lands were relatively young, only nine months old, while others had 60 years of usage.

    To determine whether urease-producing microbes are present in different soil samples, researchers measured ammonium production. Urease breaks down urea and nitrogen in the soil converts to ammonia gas (NH3) and nitrate (NO3-) leaching. In the lab, if the urease producer actively breaks down urea and releases ammonia, the Petri dish with cultured microbes will show a pink colour (see Figure below). Additionally, to identify microbial bacteria and fungi, they applied the PCR (polymerase chain reaction) technique, morphological identification methods.

    Urease detection medium for isolation of soil urease producing microorganisms (left) and a purified urease (right). Own work CC BY-NC 2.0

    Hossein found some novel microbial species, such as Pochonia bulbillosa, Mariannaea elegans, and Gliomastixsp., which were reported for the first time for their urease production. The study also revealed variations in urease activity among the isolates and a diverse microbial community composition across different locations. For instance, in Nelson, bacteria were the dominant urease producers in the soil, while in Oxford, it was fungi, marking a significant discovery in soil microbiology.

    The groundbreaking research by Dr. Hossein and his team on identifying urease-producing microbes not only provides fundamental knowledge but also opens up possibilities for practical applications. The findings suggest the potential of manipulating these microbial populations in soil to reduce urease activity, a concept that is being further explored in the N-Bio Boost program led by Professor John Hampton of Seed Technology at Lincoln University. This project, funded by the New Zealand government and the fertilizer co-op Ravensdown, aims to harness a naturally occurring fungal species in the soil to enhance the nitrogen efficiency of plants, promising both environmental and economic benefits for New Zealand.

    So next time you are walking on pasture, pause and appreciate the busy world that is found under your feet!

    This article was prepared by Master of Pest Management postgraduate student Danyu Li as part of the ECOL608 Research Methods in Ecology course.

    Alizadeh, H., Kandula, D. R. W., Hampton, J. G., Stewart, A., Leung, D. W. M., Edwards, Y., & Smith, C. (2017). Urease producing microorganisms under dairy pasture management in soils across New Zealand. Geoderma Regional, 11, 78–85. https://doi.org/10.1016/j.geodrs.2017.10.003

  • Defend the buffer!

    “Hold the line! The invasives are coming!”

    “Captain, we’re losing ground! The phosphate is encroaching.”

    “Retreat to higher ground! It’s safer up there.”

    “Send in the spiders and beetles! Earthworms, you stay here.”

    “Defend the Buffer!!!” [insert battle cry]

    If the plants and insects at Bankside Scientific Reserve could talk, they would probably sound something like that. While this 2.6 ha protected area is home to important communities of native species, it is under threat of phosphate intrusion and the breaking-up of the local habitat. Humans have greatly altered the lowland Canterbury Plains of Aotearoa/New Zealand. With the recent switch to irrigated dairy farming, very few patches of undisturbed native dryland vegetation are left in the region. This change in land-use has led to a higher reliance on fertilizers as well as water for irrigation, which has come with its own set of challenges.

    Aggressive introduced weeds, pasture grasses and forbs, have also begun to dramatically alter the functioning of native plant communities. Remnant areas are both vulnerable and essential to maintaining native ecosystems (hence the need to defend the buffer). Mike Bowie and his team investigated one of these remnant areas, looking at soil chemistry, plant distribution, and soil invertebrates along transects at the Bankside Scientific Reserve. Their study identified the current conservation value of the reserve, assessed how persistence of native biodiversity changed along the pasture-reserve gradient, and evaluated the effects of the likely infringement of irrigation water and nutrients from adjacent farmland.

    The vegetation of Bankside Scientific Reserve had been studied previously by Malloy (1970), who provided a detailed catalogue of the flora, listing 66 native vascular plant species. Jenson & Shanks (2005 – unpublished DOC Report) also completed a one-day reassessment of the site, but recorded only 14 native species. Today, the vegetation at the reserve can be described as a patchwork of native woody shrubs, made up mainly of makahikatoa, matagouri, and dry grassland. As Mike and his team point out, the modified soil conditions seem to have made the reserve not as well suited for native species, and better for the invasion by exotic plants. Compared with detailed surveys prior to the dairy conversion, only 31% of the original 65 native vascular plant species were found in the current study, and 27 new exotic species had arrived since the original survey.

    As for the underground conditions, soil nutrient concentrations and pH were lower in the reserve than in the surrounding farmland, with peaks of nitrate and ammonium being recorded at the boundary. Meanwhile, soil phosphate was higher in lower-lying areas within the reserve. Four species of endemic (Megasolecidae) earthworms were found in the reserve, but not in the neighbouring pasture.

    Other cool finds included ground wētā (Hemiandrus sp.) and trap door spider (Cantuaria dendyi). A 2011 survey by Emberson et al. (2011) also found the large rare rove beetle, Hadrotes wakefieldi, and several species of long-horn beetles. As opposed to the earthworms, the diversity and abundance of beetles and spiders in the reserve was similar to that recorded at least 10 m into surrounding farmland.

    Another interesting take-away from this research, is the importance of areas of higher elevation. Although elevational differences between highest and lowest contours were <5 m in the study, the higher areas were very important in avoiding environmental change from agricultural drainage and effluents. They helped to maintain environmental conditions that were closest to the original habitat, providing the best-suited habitat for native plants and animals.

    Image created by Catherine Priemer

    The work of Mike Bowie and his team, along with previous studies, points out the significance of small remnant reserves for the conservation of indigenous invertebrates found in these rare dryland ecosystems. Their findings also suggest that lime and phosphate fertilisers may represent the main threats to dryland nature reserves in irrigated dairy landscapes. Above all, their research underlines the importance of the soil environment in sustaining the variety of plant, animal, and insect life in this unique environment.

    Taking the team’s findings into consideration, the maintenance of a buffer zone – a protected zone established around sensitive or critical areas – could be beneficial in lessening the impacts of human activity and land disturbance around remnants, such as Bankside Scientific Reserve. To do this, native species can be planted between agricultural and conservation areas, to help protect sensitive habitat. The key take-away: Defend the Buffer!

    This article was prepared by Master of International Nature Conservation student Catherine Priemer as part of the ECOL608 Research Methods in Ecology course.

  • Can mushrooms save our planet from burping cows?

    Ever since I was a small child, I have listened to people talk about global warming and climate change. Back then I had no idea what it meant. Was our planet going to catch on fire? Were we all going to die? And why did no one seem to agree if it was fact or fiction?

    I come from a family of old school sheep and beef farmers that believed it to be a myth, or at least an over-exaggerations by scientists. As I grew up, I became increasingly more inquisitive, always asking how could something as large as our planet be warming? And what could be the cause?

    Burning earth globe west hemisphere. By Boris Ryaposov. © Adobe Stock #45170848, used with license

    Many of my questions were left unanswered until I started high school and discovered science. Straight away I fell in love with its explanations for how everything functioned. Everything from the stars in the sky right down to the soil beneath our feet (and even further down to the centre of the earth).

    Global warming quickly became a topic that piqued my interest. The more I learnt, the more obvious it became that it was a very real, very serious problem. What exactly is global warming? Thankfully, the planet isn’t going to literally catch on fire like I once thought (although fires will be more likely). The temperature of our planet is slowly increasing each year due to ‘dirty industries‘ pumping pollutants, called greenhouse gases (GHGs), into the atmosphere.

    These gasses end up trapping heat from the sun, rather than it being reflected back into space. This heat warms the atmosphere, resulting in extreme weather events becoming more frequent . This means more forest fires, droughts, floods and heatwaves, which combined have disastrous effects on the environment and negatively affect many peoples’ lives.

    Methane emissions! 牛のゲップ、メタンガス排出のイラスト. By MAYUK0. © Adobe Stock #488498751, used with license.

    Studying environmental science at university has taught me all of the main contributors to this problem. A major issue for New Zealand (NZ) is the gas methane. Methane makes up the majority of NZ’s agricultural GHG emissions, and it often comes from farm animals, such as sheep and cows. These animals produce methane during their digestive process and release it into the air by burping! Scientists have estimated that 40% of the total warming effect generated by human activities is due to methane.

    Under the Climate Change Act, NZ must reduce methane emissions from agriculture by 10% by 2030, and within the range of 24-47% reduction by 2050 (NIWA). Hence finding methods to reduce the amount of methane produced by animals is particularly important.

    The paper by K.T. Rangubhet and colleagues in the Journal Animal Feed Science and Technology found that by adding spent mushroom substrate (SMS) to cow food, that their methane emissions were significantly reduced.

    Mushroom substrate refers to the waste generated from mushroom production and is usually found in abundance after a mushroom harvesting period. The chemical composition of the mushrooms affects an animal’s fermentation and ecology. A useful byproduct of this is reduced amounts of methane burped into the atmosphere. Applying SMS to the feed of dairy cows could reduce the amount of emissions that animals contribute to greenhouse gases.

    Fungi – an image by Adrian Paterson

    Adding spent mushroom substrate uses diet and nutrition as a method to reduce GHG emissions throughout NZ. It is an approach that could allow our country to achieve the reduction goal set by the climate change act. Since this is in the next 8 years, SMS may be able to help NZ achieve these goals, especially as it is cost-effective and easy to apply. Other approaches are herd management, where animal breeds are selected that can utilise food more efficiently, and emit less methane. The strategy also includes reducing the number of unproductive animals in a herd to improve profitability.

    If these methods continue to show promise by substantially reducing methane emissions from dairy cows, this could be applied to farms throughout NZ. SMS could make a real difference to this country’s effort to prevent climate change due to GHG. This could then be part of a global solution to help to mitigate climate change and slow down our planet’s increasing temperature.

    The author Polly Cavanagh is a postgraduate student in the Master of Science -Environmental Science taught at Lincoln University. This article was written as an assessment for ECOL 608 Research Methods in Ecology.